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I have modelled a protein (a kinase) using Modeller. Then I validated it using Molprobity. The output says the phi/psi angles of 2% of the residues (should be.. When proline is in a peptide bond, it does not have a hydrogen on the amino group, so it cannot donate a hydrogen bond to stabilize an helix or a sheet. . When proline is found in an helix, the helix will have a slight bend due to the lack of the hydrogen bond.. 1 Aug 2016 . Proline has an unusual shape for an amino acid because its R-group folds back on itself to form a ring with the amino group of the backbone. That changes the.. The breaking in hydrogen bonds around proline is found to play a role in destabilizing alpha-helical conformations, which, however, provides the favored.. In an -helical configuration, MeA at position 10 would normally . In addition, proline is frequently found with glycine in peptide channels as well as within . higher conductance states, which are typical of alamethicin, are rarely encountered. 908adb44bc
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